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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 827 164

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 179 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 342 59

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 191 39

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 705 116

Repositories

Showing 10 of 388 repositories
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 1 0 12 Updated Apr 23, 2026
  • avillachlab-jenkins-bdc-etl Public
    hms-dbmi/avillachlab-jenkins-bdc-etl’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Apr 23, 2026
  • uchimata Public

    Library for visualizing three-dimensional genome models and associated genomics data

    hms-dbmi/uchimata’s past year of commit activity
    TypeScript 8 MIT 0 4 3 Updated Apr 22, 2026
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure’s past year of commit activity
    Java 6 Apache-2.0 3 0 4 Updated Apr 22, 2026
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 3 Updated Apr 22, 2026
  • pic-sure-hpds Public
    hms-dbmi/pic-sure-hpds’s past year of commit activity
    Java 3 Apache-2.0 7 0 3 Updated Apr 22, 2026
  • rlm Public Forked from alexzhang13/rlm

    General plug-and-play inference library for Recursive Language Models (RLMs), supporting various sandboxes.

    hms-dbmi/rlm’s past year of commit activity
    Python 0 MIT 647 0 11 Updated Apr 21, 2026
  • pic-sure-r-adapter-hpds Public

    Adapter library for PIC-SURE HPDS Resources (in R language)

    hms-dbmi/pic-sure-r-adapter-hpds’s past year of commit activity
    R 2 Apache-2.0 2 0 0 Updated Apr 21, 2026
  • pic-sure-python-adapter-hpds Public

    A Python client library for PIC-SURE-HPDS resources

    hms-dbmi/pic-sure-python-adapter-hpds’s past year of commit activity
    Python 1 Apache-2.0 1 0 2 Updated Apr 21, 2026
  • InterSCellar Public
    hms-dbmi/InterSCellar’s past year of commit activity
    Python 16 MIT 2 0 2 Updated Apr 21, 2026
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