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GPU accelerated image processing for everyone

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ImageImageImageImage

Copies an image specified by its name from GPU memory back to ImageJ and shows it.

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.5.0.1.jar.

Usage in ImageJ macro

Ext.CLIJ2_pull(String image);

Example notebooks

Image applyVectorFieldMD
Image basics
Image basic_image_processing
Image benchmarking
Image binary_processing
Image blur
Image clij1_clij2_combination
Image compare_workflows
Image count_neighbors
Image count_overlap_between_channels
Image crop_and_paste
Image custom_clij_macro_functions
Image drosophila_max_cylinder_projection
Image filtering_in_graphs
Image image_segmentation_3d
Image image_types
Image labeling
Image labelmap_voronoi
Image matrix_multiply
Image maximumProjection
Image mean_of_touching_neighbors
Image measure_overlap
Image morpholibj_classic_watershed
Image neighborhood_definitions
Image neighbors_of_neighbors
Image outlines_numbers_overlay
Image parametric_images
Image process_multichannel_timelapse
Image rotate_comparison_IJ_CLIJ
Image spots_pointlists_matrices_tables
Image spot_detection
Image superpixel_segmentation
Image tables
Image time_tracing
Image tribolium_morphometry
Image voronoi
Image voronoi_otsu_labeling
Image working_with_rois
Image napari_dask.ipynb
Image neighbors_of_neighbors.ipynb
Image shape_descriptors_based_on_neighborhood_graphs.ipynb
Image Segmentation_3D.ipynb
Image affine_transforms.ipynb
Image tribolium_morphometry.ipynb
Image affine_transforms.ipynb
Image benchmarking.ipynb
Image connected_component_labeling.ipynb
Image statistics_of_labeled_pixels.ipynb

Example scripts

Image absolute.ijm
Image addImages.ijm
Image addImages3D.ijm
Image affineTransform.ijm
Image affineTransform3D.ijm
Image allocateBigImages.ijm
Image applyVectorField.ijm
Image applyVectorFieldMD.ijm
Image autoThreshold.ijm
Image backgroundSubtraction.ijm
Image basics.ijm
Image basic_image_processing.ijm
Image benchmarkFillHoles.ijm
Image benchmarking.ijm
Image benchmarkSkeletonize.ijm
Image benchmarkVoronoi.ijm
Image bigImageTransfer.ijm
Image binary_processing.ijm
Image bitdepthConversion.ijm
Image blur.ijm
Image centroid_visualisation.ijm
Image check_if_positions_are_in_roi.ijm
Image clij1clij2_combination.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/clij1_clij2_combination.ijm)
Image [compare_workflows.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/compare_workflows.ijm)
Image [convert.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/convert.ijm)
Image [count_neighbors.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/count_neighbors.ijm)
Image [count_overlap_between_channels.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/count_overlap_between_channels.ijm)
Image [createImages.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/createImages.ijm)
Image [crop.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/crop.ijm)
Image [crop_and_paste.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/crop_and_paste.ijm)
Image [customOperation.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/customOperation.ijm)
Image [custom_clij_macro_functions.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/custom_clij_macro_functions.ijm)
Image [custom_opencl.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/custom_opencl.ijm)
Image [depth_colour_projection.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/depth_colour_projection.ijm)
Image [distanceMap.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/distanceMap.ijm)
Image [distance_map.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/distance_map.ijm)
Image [division_visualisation.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/division_visualisation.ijm)
Image [drawLine.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/drawLine.ijm)
Image [drosophila_max_cylinder_projection.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/drosophila_max_cylinder_projection.ijm)
Image [excludeLabelsOnEdges.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/excludeLabelsOnEdges.ijm)
Image [excludeLabelsWithinRange.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/excludeLabelsWithinRange.ijm)
Image [fillHoles.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/fillHoles.ijm)
Image [filtering_in_graphs.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/filtering_in_graphs.ijm)
Image [filter_label_maps.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/filter_label_maps.ijm)
Image [flip.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/flip.ijm)
Image [grid.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/grid.ijm)
Image [image_segmentation_3d.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/image_segmentation_3d.ijm)
Image [image_types.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/image_types.ijm)
Image [intensity_per_label.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/intensity_per_label.ijm)
Image [jaccard_matrix.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/jaccard_matrix.ijm)
Image [labeling.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/labeling.ijm)
Image [labelmap_voronoi.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/labelmap_voronoi.ijm)
Image [large_matrices.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/large_matrices.ijm)
Image [localMaximum.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/localMaximum.ijm)
Image [local_entropy.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/local_entropy.ijm)
Image [local_entropy_3d.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/local_entropy_3d.ijm)
Image [make_super_blobs.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/make_super_blobs.ijm)
Image [matrix_multiply.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/matrix_multiply.ijm)
Image [maximumProjection.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/maximumProjection.ijm)
Image [mean.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/mean.ijm)
Image [mean2d.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/mean2d.ijm)
Image [mean_detailed_comparison_IJ_CLIJ.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/mean_detailed_comparison_IJ_CLIJ.ijm)
Image [mean_detailed_comparison_IJ_CLIJ_radius.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/mean_detailed_comparison_IJ_CLIJ_radius.ijm)
Image [mean_of_touching_neighbors.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/mean_of_touching_neighbors.ijm)
Image [measure_overlap.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/measure_overlap.ijm)
Image [medianZProjectionComparion.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/medianZProjectionComparion.ijm)
Image [meshTouchingNeighbors.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/meshTouchingNeighbors.ijm)
Image [mesh_closest_points.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/mesh_closest_points.ijm)
Image [minimum.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/minimum.ijm)
Image [morpholibj_classic_watershed.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/morpholibj_classic_watershed.ijm)
Image [motionCorrection.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/motionCorrection.ijm)
Image [motionCorrection_compare_stackreg.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/motionCorrection_compare_stackreg.ijm)
Image [neighborhood_definitions.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/neighborhood_definitions.ijm)
Image [neighbors_of_neighbors.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/neighbors_of_neighbors.ijm)
Image [orthogonalMaximumProjections.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/orthogonalMaximumProjections.ijm)
Image [outline.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/outline.ijm)
Image [outlines_numbers_overlay.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/outlines_numbers_overlay.ijm)
Image [parametric_images.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/parametric_images.ijm)
Image [particle_analysis.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/particle_analysis.ijm)
Image [process_5D_stack.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/process_5D_stack.ijm)
Image [process_multichannel_timelapse.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/process_multichannel_timelapse.ijm)
Image [projections.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/projections.ijm)
Image [pushCurrentZStack.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/pushCurrentZStack.ijm)
Image [pushSlice.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/pushSlice.ijm)
Image [push_pull_selections.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/push_pull_selections.ijm)
Image [push_pull_slices.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/push_pull_slices.ijm)
Image [reduceAndCombineImages.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/reduceAndCombineImages.ijm)
Image [reslicing.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/reslicing.ijm)
Image [rotate.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/rotate.ijm)
Image [rotateFree.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/rotateFree.ijm)
Image [rotateOverwriteOriginal.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/rotateOverwriteOriginal.ijm)
Image [rotate_comparison_IJ_CLIJ.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/rotate_comparison_IJ_CLIJ.ijm)
Image [rotating_sphere.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/rotating_sphere.ijm)
Image [scaleFree.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/scaleFree.ijm)
Image [spots_pointlists_matrices_tables.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/spots_pointlists_matrices_tables.ijm)
Image [spot_detection.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/spot_detection.ijm)
Image [spot_distance_measurement.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/spot_distance_measurement.ijm)
Image [superpixel_segmentation.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/superpixel_segmentation.ijm)
Image [tables.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/tables.ijm)
Image [thresholding.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/thresholding.ijm)
Image [time_tracing.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/time_tracing.ijm)
Image [topHat.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/topHat.ijm)
Image [translate.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/translate.ijm)
Image [tribolium_morphometry.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/tribolium_morphometry.ijm)
Image [tubeness.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/tubeness.ijm)
Image [turn_stack.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/turn_stack.ijm)
Image [voronoi.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/voronoi.ijm)
Image [voronoi_otsu_labeling.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/voronoi_otsu_labeling.ijm)
Image [workflow.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/workflow.ijm)
Image [working_with_rois.ijm](https://github.com/clij/clij2-docs/blob/master/src/main/macro/working_with_rois.ijm)
Image [blurImage.m](https://github.com/clij/clatlab/blob/master/src/main/matlab/blurImage.m)
Image [matrix_multiply.m](https://github.com/clij/clatlab/blob/master/src/main/matlab/matrix_multiply.m)
Image [matrix_multiply_benchmarking.m](https://github.com/clij/clatlab/blob/master/src/main/matlab/matrix_multiply_benchmarking.m)
Image [mesh_close_points.m](https://github.com/clij/clatlab/blob/master/src/main/matlab/mesh_close_points.m)
Image [simplePipeline.m](https://github.com/clij/clatlab/blob/master/src/main/matlab/simplePipeline.m)
Image [blur_frame_by_frame.js](https://github.com/clij/clicy/blob/master/src/main/javascript/blur_frame_by_frame.js)
Image [simplePipeline.js](https://github.com/clij/clicy/blob/master/src/main/javascript/simplePipeline.js)
Image [automaticThreshold.js](https://github.com/clij/clij2-docs/blob/master/src/main/javascript/automaticThreshold.js)
Image [maximumProjection.js](https://github.com/clij/clij2-docs/blob/master/src/main/javascript/maximumProjection.js)
Image [automaticThreshold.groovy](https://github.com/clij/clij2-docs/blob/master/src/main/groovy/automaticThreshold.groovy)
Image [maximumProjection.groovy](https://github.com/clij/clij2-docs/blob/master/src/main/groovy/maximumProjection.groovy)
Image [automaticThreshold.bsh](https://github.com/clij/clij2-docs/blob/master/src/main/beanshell/automaticThreshold.bsh)
Image [maximumProjection.bsh](https://github.com/clij/clij2-docs/blob/master/src/main/beanshell/maximumProjection.bsh)
Image [addImages.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/addImages.py)
Image [affineTransform.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/affineTransform.py)
Image [applyVectorField.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/applyVectorField.py)
Image [automaticThreshold.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/automaticThreshold.py)
Image [backgroundSubtraction.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/backgroundSubtraction.py)
Image [binaryProcessing.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/binaryProcessing.py)
Image [blur.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/blur.py)
Image [crop.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/crop.py)
Image [interactiveCylinderProjection.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/interactiveCylinderProjection.py)
Image [interactiveSphereProjection.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/interactiveSphereProjection.py)
Image [multi_GPU_demo.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/multi_GPU_demo.py)
Image [reslicing.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/reslicing.py)
Image [rgbReplaceBlackAndWhite.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/rgbReplaceBlackAndWhite.py)
Image [rotateFree.py](https://github.com/clij/clij2-docs/blob/master/src/main/jython/rotateFree.py)
Image [count_blobs.py](https://github.com/clEsperanto/pyclesperanto_prototype/tree/master/demo/basics/count_blobs.py)
Image [napari.py
Image napari_magicgui.py
Image napari_performance_demo.py
Image tribolium.py

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