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Jirka Borovec Borda

Computer Vision & Machine Learning & Bio-Medical Imaging & Deep Learning

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285 followers · 168 following · 172

Highlights

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pyImSegm

Image segmentation - general superpixel segmentation & center detection & region growing

Python 172 52
BIRL

BIRL: Benchmark on Image Registration methods with Landmark validations

Python 43 16
pyBPDL

Binary Pattern Dictionary Learning for gene activation in microscopy images

Python 5 1
PyTorchLightning/pytorch-lightning

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate.

Python 8.6k 991
ij-CMP-BIA

Extension for ImageJ (Fiji) by BIA segmentation methods as plugins and some other useful API for image segmentation.

Java 1 9
docker_python-opencv-ffmpeg

Forked from Valian/docker-python-opencv-ffmpeg

Dockerfile containing FFmpeg, OpenCV4 and Python2/3, based on Ubuntu LTS

Dockerfile 23 15

2,285 contributions in the last year

Activity overview

Contributed to PyTorchLightning/pytorch-lightning, PyTorchLightning/pytorch-lightning-bolts, ultralytics/yolov5 and 5 other repositories

Contribution activity

September 2020

Borda/Yolov5_DeepSort Python Sep 23

Created a pull request in ultralytics/yolov5 that received 9 comments

update expt name comment and folder parsing for training

updating argument description and cleaning weak parsing indexes from listed folders

+18 −11 • 9 comments

spec Horovod version Sep 25
upgrade PT 1.6 version fro Drone testing Sep 25
return simple docs to methods Sep 24
test examples Sep 24
fix building nightly Sep 24
dockers nightly Sep 22
use parallel testing Sep 22
nightly releases Sep 18
build more docker configs Sep 17
fix lib paths after Wandb 0.10 Sep 16
update stale config Sep 15
build docs on master Sep 14
drop v0.10 deprecated Sep 10
fix docs built - drop nb sphinx Sep 10
Revert "ref: separate trainer docstrings poc (#3418)" Sep 9
license update Sep 9
ignore types in files Sep 9
add CI for building dockers Sep 7

add CI - build & run [wip] Sep 1
update references Sep 1

using Submodules - Yolo5 + Deep_sort Sep 23

adding minimal CI Sep 11

Fix ModelCheckpoint period Sep 25
Enable PyTorch 1.7 in conda CI Sep 25
Add datamodule parameter to lr_find() Sep 25
Add ModelCheckpoint.to_yaml method Sep 25
Wrap prepare_data and setup only once inside DataModule Sep 25
Fix padded_gather to allow tensor attributes in TrainResult Sep 25
Allow on_save_checkpoint callback functions to run on all ranks Sep 25
Split GPUStatsMonitor function Sep 24
Fix docstring early_stop_callback arguments Sep 24
Lightning docker image based on base-cuda Sep 24
Allow ModelCheckpoint monitor to be None Sep 24
signal handling and teardown Sep 24
Fix incorrect "Saving latest checkpoint" warning Sep 24
Support checkpoint hooks on data module Sep 23
fix examples Sep 23
fix on_fit_start Sep 23
fix dp issues + update examples and test examples Sep 23
Mocking loggers (part 1, wandb) Sep 22
update readme with new notebooks Sep 22
add lightning colab tutorial notebooks Sep 22
Update gitignore Sep 21
Small documentation fix Sep 21
Add stronger typing to gradient accumulation scheduler callback Sep 21
Added check to verify xla device is TPU Sep 21
use tmpdir in tests when writing predictions to disk Sep 20
Some pull request reviews not shown.

Kitti Datamodule Sep 27
Adds Contibuting.md file Sep 26
fix negative samples in nt_xent loss Sep 25
U-net implementation Sep 24
Add lightning argument parser Sep 23
autoencoders update Sep 17
Swav Sep 17
updated import path for simclr model Sep 17
Fix for SiameseArm has no pooler Sep 16
Fix examples for pretrained AE and VAE models Sep 15
ref: fix fastrcnn test Sep 15
add correct link for CPCv2 resnet-18 Sep 15
updated cpc docs with imagenet Sep 11
add seed_everything to ae/vae examples Sep 11
Modularize AE & VAE Sep 10
wip Byol update Sep 10
Add output_dim parameter to LinearRegression Sep 10
updated cpc docs Sep 10
weights link for cpc_v2 Sep 10
fix skipped tests Sep 10

Add pytorch-lightning to pytorch-integration-testing Sep 22

Add CSS for `automethod` Sep 15

Created an issue in ultralytics/yolov5 that received 10 comments

How suspend image mixing

❔Question I want to run image training with quite a conservative augmentation so just flipping and small translation/zoom, but the samples are alwa…

10 comments

add support for 1.7 nightly Sep 17
add tests for metrics in DDP Sep 15
handle aggregation of different batches Sep 15
split metric in pre- and post- sync/reduce computation steps Sep 15

custome name for experiment Sep 16
use alternative optimizer Sep 8

re-enable sphinx doctests Sep 15

Multiple timeouts per label Sep 15

4 contributions in private repositories Sep 22

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